General
Filename(s) sub-007_task-Oddball_run-01_eeg.set
MNE object type RawEEGLAB
Measurement date Unknown
Participant sub-007
Experimenter Unknown
Acquisition
Duration 00:11:22 (HH:MM:SS)
Sampling frequency 500.00 Hz
Time points 340,994
Channels
EEG
EOG
Head & sensor digitization 66 points
Filters
Highpass 0.00 Hz
Lowpass 250.00 Hz
Time series
Segment 1 of 5
Time series
Segment 2 of 5
Time series
Segment 3 of 5
Time series
Segment 4 of 5
Time series
Segment 5 of 5
PSD
General
Filename(s) sub-007_task-Oddball_run-01_eeg.set
MNE object type RawEEGLAB
Measurement date Unknown
Participant sub-007
Experimenter Unknown
Acquisition
Duration 00:11:22 (HH:MM:SS)
Sampling frequency 500.00 Hz
Time points 340,994
Channels
EEG
EOG
Head & sensor digitization 66 points
Filters
Highpass 1.00 Hz
Lowpass 120.00 Hz
Time series
Segment 1 of 5
Time series
Segment 2 of 5
Time series
Segment 3 of 5
Time series
Segment 4 of 5
Time series
Segment 5 of 5
PSD
General
MNE object type Epochs
Measurement date Unknown
Participant sub-007
Experimenter Unknown
Acquisition
Total number of events 200
Events counts ODDBALL RARE: 44
ODDBALL STANDARD: 156
Time range -2.000 – 2.000 s
Baseline off
Sampling frequency 500.00 Hz
Time points 2,001
Metadata 200 rows × 7 columns
Channels
EEG
EOG
Head & sensor digitization 66 points
Filters
Highpass 1.00 Hz
Lowpass 120.00 Hz
Projections Average EEG reference (off)
Epoch # event_name ODDBALL DONE ODDBALL RARE ODDBALL STANDARD ODDBALL START STATUS/S 50 STATUS/boundary
0 ODDBALL STANDARD 0.000 -0.986
1 ODDBALL STANDARD -1.582
2 ODDBALL STANDARD 0.000
3 ODDBALL STANDARD 1.830 0.000
4 ODDBALL RARE 0.000 -1.830
5 ODDBALL STANDARD -1.564 0.000
6 ODDBALL STANDARD -1.580
7 ODDBALL STANDARD 0.000
8 ODDBALL STANDARD -1.832
9 ODDBALL STANDARD -1.988
10 ODDBALL RARE 0.000 1.812
11 ODDBALL STANDARD -1.812 0.000
12 ODDBALL STANDARD 0.000
13 ODDBALL STANDARD -1.564
14 ODDBALL STANDARD -1.952
15 ODDBALL STANDARD 1.956 0.000
16 ODDBALL RARE 0.000 -1.956
17 ODDBALL STANDARD 0.000
18 ODDBALL STANDARD 0.000
19 ODDBALL STANDARD 1.572 -1.628
20 ODDBALL RARE 0.000 -1.572
21 ODDBALL STANDARD -1.762 0.000
22 ODDBALL STANDARD -1.786
23 ODDBALL STANDARD -1.858
24 ODDBALL STANDARD 0.000
25 ODDBALL RARE 0.000 1.906
26 ODDBALL STANDARD -1.906 0.000
27 ODDBALL STANDARD 0.000
28 ODDBALL STANDARD 0.000
29 ODDBALL STANDARD 0.000
30 ODDBALL STANDARD 1.628 0.000
31 ODDBALL RARE 0.000 -1.628
32 ODDBALL STANDARD 0.000
33 ODDBALL STANDARD 0.000
34 ODDBALL STANDARD 0.000
35 ODDBALL STANDARD 1.996 0.000
36 ODDBALL RARE 0.000 -1.996
37 ODDBALL STANDARD -1.932 0.000
38 ODDBALL STANDARD -1.960
39 ODDBALL RARE 0.000 1.702
40 ODDBALL STANDARD -1.702 0.000
41 ODDBALL STANDARD 0.000
42 ODDBALL STANDARD 0.000
43 ODDBALL RARE 0.000
44 ODDBALL STANDARD 0.000
45 ODDBALL STANDARD -1.846
46 ODDBALL STANDARD -1.532
47 ODDBALL RARE 0.000
48 ODDBALL STANDARD 0.000
49 ODDBALL STANDARD 0.000
50 ODDBALL STANDARD 0.000
51 ODDBALL STANDARD 0.000
52 ODDBALL STANDARD -1.934
53 ODDBALL RARE 0.000 1.846
54 ODDBALL STANDARD -1.846 0.000
55 ODDBALL STANDARD -1.690
56 ODDBALL RARE 0.000
57 ODDBALL STANDARD 0.000
58 ODDBALL STANDARD 0.000
59 ODDBALL RARE 0.000 1.848
60 ODDBALL STANDARD -1.848 0.000
61 ODDBALL STANDARD 0.000
62 ODDBALL STANDARD -1.978
63 ODDBALL STANDARD -1.926
64 ODDBALL STANDARD -1.782
65 ODDBALL RARE 0.000 1.776
66 ODDBALL STANDARD -1.776 0.000
67 ODDBALL STANDARD 0.000
68 ODDBALL RARE 0.000
69 ODDBALL STANDARD 0.000
70 ODDBALL STANDARD 1.858 0.000
71 ODDBALL RARE 0.000 -1.858
72 ODDBALL STANDARD -1.946 0.000
73 ODDBALL STANDARD -1.806
74 ODDBALL RARE 0.000
75 ODDBALL STANDARD 0.000
76 ODDBALL STANDARD -1.584
77 ODDBALL STANDARD -1.656
78 ODDBALL STANDARD 0.000
79 ODDBALL STANDARD 0.000
80 ODDBALL RARE 0.000
81 ODDBALL STANDARD 0.000
82 ODDBALL STANDARD -1.726
83 ODDBALL STANDARD 0.000
84 ODDBALL STANDARD 0.000
85 ODDBALL STANDARD 1.710 0.000
86 ODDBALL RARE 0.000 -1.710
87 ODDBALL STANDARD 0.000
88 ODDBALL STANDARD -1.702
89 ODDBALL RARE 0.000
90 ODDBALL STANDARD 0.000
91 ODDBALL STANDARD -1.516
92 ODDBALL STANDARD 0.000
93 ODDBALL STANDARD -1.616
94 ODDBALL RARE 0.000
95 ODDBALL STANDARD 0.000
96 ODDBALL STANDARD 1.942 0.000
97 ODDBALL RARE 0.000 -1.942
98 ODDBALL STANDARD -2.000 0.000
99 ODDBALL STANDARD 0.000
100 ODDBALL STANDARD 0.000
101 ODDBALL RARE 0.000
102 ODDBALL STANDARD 0.000
103 ODDBALL STANDARD 1.690 -1.792
104 ODDBALL RARE 0.000 -1.690
105 ODDBALL STANDARD 0.000
106 ODDBALL STANDARD 0.000
107 ODDBALL STANDARD 1.744 0.000
108 ODDBALL RARE 0.000 -1.744
109 ODDBALL STANDARD 0.000
110 ODDBALL STANDARD 0.000
111 ODDBALL STANDARD -1.728
112 ODDBALL STANDARD 0.000
113 ODDBALL STANDARD 1.980 -1.878
114 ODDBALL RARE 0.000 -1.980
115 ODDBALL STANDARD -1.960 0.000
116 ODDBALL STANDARD -1.532
117 ODDBALL STANDARD 0.000
118 ODDBALL STANDARD 0.000
119 ODDBALL STANDARD 0.000
120 ODDBALL RARE 0.000
121 ODDBALL STANDARD 0.000
122 ODDBALL STANDARD 0.000
123 ODDBALL RARE 0.000 1.590
124 ODDBALL STANDARD -1.590 0.000
125 ODDBALL STANDARD 0.000
126 ODDBALL STANDARD 0.000
127 ODDBALL STANDARD -1.618
128 ODDBALL STANDARD 0.000
129 ODDBALL RARE 0.000 1.764
130 ODDBALL STANDARD -1.764 0.000
131 ODDBALL STANDARD -1.986
132 ODDBALL STANDARD 0.000
133 ODDBALL STANDARD -1.740
134 ODDBALL STANDARD 0.000
135 ODDBALL RARE 0.000
136 ODDBALL STANDARD 0.000
137 ODDBALL STANDARD 0.000
138 ODDBALL STANDARD 0.000
139 ODDBALL STANDARD -1.942
140 ODDBALL RARE 0.000
141 ODDBALL STANDARD 0.000
142 ODDBALL STANDARD -1.662
143 ODDBALL RARE 0.000 1.674
144 ODDBALL STANDARD -1.674 0.000
145 ODDBALL STANDARD -1.770
146 ODDBALL RARE 0.000
147 ODDBALL STANDARD 0.000
148 ODDBALL STANDARD 0.000
149 ODDBALL STANDARD -1.912
150 ODDBALL STANDARD 0.000
151 ODDBALL STANDARD -1.730
152 ODDBALL RARE 0.000 1.688
153 ODDBALL STANDARD -1.688 0.000
154 ODDBALL STANDARD 0.000
155 ODDBALL STANDARD -1.964
156 ODDBALL RARE 0.000
157 ODDBALL STANDARD 0.000
158 ODDBALL STANDARD 0.000
159 ODDBALL STANDARD -1.584
160 ODDBALL STANDARD 1.818 -1.540
161 ODDBALL RARE 0.000 -1.818
162 ODDBALL STANDARD 0.000
163 ODDBALL STANDARD 0.000
164 ODDBALL RARE 0.000
165 ODDBALL STANDARD 0.000
166 ODDBALL STANDARD 0.000
167 ODDBALL STANDARD 0.000
168 ODDBALL STANDARD -1.546
169 ODDBALL RARE 0.000 1.628
170 ODDBALL STANDARD -1.628 0.000
171 ODDBALL STANDARD 0.000
172 ODDBALL RARE 0.000 1.624
173 ODDBALL STANDARD -1.624 0.000
174 ODDBALL STANDARD 0.000
175 ODDBALL STANDARD 0.000
176 ODDBALL STANDARD -1.874
177 ODDBALL STANDARD 1.598 0.000
178 ODDBALL RARE 0.000 -1.598
179 ODDBALL STANDARD 0.000
180 ODDBALL STANDARD -1.864
181 ODDBALL STANDARD -1.868
182 ODDBALL STANDARD 0.000
183 ODDBALL RARE 0.000
184 ODDBALL STANDARD 0.000
185 ODDBALL STANDARD -1.626
186 ODDBALL STANDARD -1.944
187 ODDBALL STANDARD 0.000
188 ODDBALL STANDARD 0.000
189 ODDBALL RARE 0.000 1.588
190 ODDBALL STANDARD -1.588 0.000
191 ODDBALL STANDARD 1.666 0.000
192 ODDBALL RARE 0.000 -1.666
193 ODDBALL STANDARD 0.000
194 ODDBALL STANDARD 0.000
195 ODDBALL STANDARD 0.000
196 ODDBALL STANDARD 0.000
197 ODDBALL STANDARD -1.552
198 ODDBALL RARE 0.000 1.768
199 ODDBALL STANDARD 0.502 -1.768 0.000

200 rows × 8 columns

ERP image (EEG)
No epochs exceeded the rejection thresholds. Nothing was dropped.
PSD
PSD calculated from 200 epochs (800.0 s).
Autoreject cleaning
Autoreject was run to produce cleaner epochs before fitting ICA. 0 epochs were rejected because more than {'eeg': 16} channels were bad (cross-validated n_interpolate limit; excluding globally bad and non-data channels, shown in white). Note that none of the blue segments were actually interpolated before submitting the data to ICA. This is following the recommended approach for ICA described in the the Autoreject documentation.
Method picard
Fit parameters fastica_it=5
max_iter=500
Fit 156 iterations on epochs (400200 samples)
ICA components 63
Available PCA components 63
Channel types eeg
ICA components marked for exclusion ICA000
ICA002
ICA060
Original and cleaned signal
Scores for matching EOG patterns
Original and cleaned EOG epochs
ICA component topographies
ICA component topographies
ICA component topographies
ICA component topographies
ICA component properties
ICA component 0.
ICA component properties
ICA component 1.
ICA component properties
ICA component 2.
ICA component properties
ICA component 3.
ICA component properties
ICA component 4.
ICA component properties
ICA component 5.
ICA component properties
ICA component 6.
ICA component properties
ICA component 7.
ICA component properties
ICA component 8.
ICA component properties
ICA component 9.
ICA component properties
ICA component 10.
ICA component properties
ICA component 11.
ICA component properties
ICA component 12.
ICA component properties
ICA component 13.
ICA component properties
ICA component 14.
ICA component properties
ICA component 15.
ICA component properties
ICA component 16.
ICA component properties
ICA component 17.
ICA component properties
ICA component 18.
ICA component properties
ICA component 19.
ICA component properties
ICA component 20.
ICA component properties
ICA component 21.
ICA component properties
ICA component 22.
ICA component properties
ICA component 23.
ICA component properties
ICA component 24.
ICA component properties
ICA component 25.
ICA component properties
ICA component 26.
ICA component properties
ICA component 27.
ICA component properties
ICA component 28.
ICA component properties
ICA component 29.
ICA component properties
ICA component 30.
ICA component properties
ICA component 31.
ICA component properties
ICA component 32.
ICA component properties
ICA component 33.
ICA component properties
ICA component 34.
ICA component properties
ICA component 35.
ICA component properties
ICA component 36.
ICA component properties
ICA component 37.
ICA component properties
ICA component 38.
ICA component properties
ICA component 39.
ICA component properties
ICA component 40.
ICA component properties
ICA component 41.
ICA component properties
ICA component 42.
ICA component properties
ICA component 43.
ICA component properties
ICA component 44.
ICA component properties
ICA component 45.
ICA component properties
ICA component 46.
ICA component properties
ICA component 47.
ICA component properties
ICA component 48.
ICA component properties
ICA component 49.
ICA component properties
ICA component 50.
ICA component properties
ICA component 51.
ICA component properties
ICA component 52.
ICA component properties
ICA component 53.
ICA component properties
ICA component 54.
ICA component properties
ICA component 55.
ICA component properties
ICA component 56.
ICA component properties
ICA component 57.
ICA component properties
ICA component 58.
ICA component properties
ICA component 59.
ICA component properties
ICA component 60.
ICA component properties
ICA component 61.
ICA component properties
ICA component 62.
Events
General
MNE object type Epochs
Measurement date Unknown
Participant sub-007
Experimenter Unknown
Acquisition
Total number of events 200
Events counts ODDBALL RARE: 44
ODDBALL STANDARD: 156
Time range -2.000 – 2.000 s
Baseline off
Sampling frequency 500.00 Hz
Time points 2,001
Metadata 200 rows × 7 columns
Channels
EEG
EOG
Head & sensor digitization 66 points
Filters
Highpass 1.00 Hz
Lowpass 120.00 Hz
Projections Average EEG reference (off)
Epoch # event_name ODDBALL DONE ODDBALL RARE ODDBALL STANDARD ODDBALL START STATUS/S 50 STATUS/boundary
0 ODDBALL STANDARD 0.000 -0.986
1 ODDBALL STANDARD -1.582
2 ODDBALL STANDARD 0.000
3 ODDBALL STANDARD 1.830 0.000
4 ODDBALL RARE 0.000 -1.830
5 ODDBALL STANDARD -1.564 0.000
6 ODDBALL STANDARD -1.580
7 ODDBALL STANDARD 0.000
8 ODDBALL STANDARD -1.832
9 ODDBALL STANDARD -1.988
10 ODDBALL RARE 0.000 1.812
11 ODDBALL STANDARD -1.812 0.000
12 ODDBALL STANDARD 0.000
13 ODDBALL STANDARD -1.564
14 ODDBALL STANDARD -1.952
15 ODDBALL STANDARD 1.956 0.000
16 ODDBALL RARE 0.000 -1.956
17 ODDBALL STANDARD 0.000
18 ODDBALL STANDARD 0.000
19 ODDBALL STANDARD 1.572 -1.628
20 ODDBALL RARE 0.000 -1.572
21 ODDBALL STANDARD -1.762 0.000
22 ODDBALL STANDARD -1.786
23 ODDBALL STANDARD -1.858
24 ODDBALL STANDARD 0.000
25 ODDBALL RARE 0.000 1.906
26 ODDBALL STANDARD -1.906 0.000
27 ODDBALL STANDARD 0.000
28 ODDBALL STANDARD 0.000
29 ODDBALL STANDARD 0.000
30 ODDBALL STANDARD 1.628 0.000
31 ODDBALL RARE 0.000 -1.628
32 ODDBALL STANDARD 0.000
33 ODDBALL STANDARD 0.000
34 ODDBALL STANDARD 0.000
35 ODDBALL STANDARD 1.996 0.000
36 ODDBALL RARE 0.000 -1.996
37 ODDBALL STANDARD -1.932 0.000
38 ODDBALL STANDARD -1.960
39 ODDBALL RARE 0.000 1.702
40 ODDBALL STANDARD -1.702 0.000
41 ODDBALL STANDARD 0.000
42 ODDBALL STANDARD 0.000
43 ODDBALL RARE 0.000
44 ODDBALL STANDARD 0.000
45 ODDBALL STANDARD -1.846
46 ODDBALL STANDARD -1.532
47 ODDBALL RARE 0.000
48 ODDBALL STANDARD 0.000
49 ODDBALL STANDARD 0.000
50 ODDBALL STANDARD 0.000
51 ODDBALL STANDARD 0.000
52 ODDBALL STANDARD -1.934
53 ODDBALL RARE 0.000 1.846
54 ODDBALL STANDARD -1.846 0.000
55 ODDBALL STANDARD -1.690
56 ODDBALL RARE 0.000
57 ODDBALL STANDARD 0.000
58 ODDBALL STANDARD 0.000
59 ODDBALL RARE 0.000 1.848
60 ODDBALL STANDARD -1.848 0.000
61 ODDBALL STANDARD 0.000
62 ODDBALL STANDARD -1.978
63 ODDBALL STANDARD -1.926
64 ODDBALL STANDARD -1.782
65 ODDBALL RARE 0.000 1.776
66 ODDBALL STANDARD -1.776 0.000
67 ODDBALL STANDARD 0.000
68 ODDBALL RARE 0.000
69 ODDBALL STANDARD 0.000
70 ODDBALL STANDARD 1.858 0.000
71 ODDBALL RARE 0.000 -1.858
72 ODDBALL STANDARD -1.946 0.000
73 ODDBALL STANDARD -1.806
74 ODDBALL RARE 0.000
75 ODDBALL STANDARD 0.000
76 ODDBALL STANDARD -1.584
77 ODDBALL STANDARD -1.656
78 ODDBALL STANDARD 0.000
79 ODDBALL STANDARD 0.000
80 ODDBALL RARE 0.000
81 ODDBALL STANDARD 0.000
82 ODDBALL STANDARD -1.726
83 ODDBALL STANDARD 0.000
84 ODDBALL STANDARD 0.000
85 ODDBALL STANDARD 1.710 0.000
86 ODDBALL RARE 0.000 -1.710
87 ODDBALL STANDARD 0.000
88 ODDBALL STANDARD -1.702
89 ODDBALL RARE 0.000
90 ODDBALL STANDARD 0.000
91 ODDBALL STANDARD -1.516
92 ODDBALL STANDARD 0.000
93 ODDBALL STANDARD -1.616
94 ODDBALL RARE 0.000
95 ODDBALL STANDARD 0.000
96 ODDBALL STANDARD 1.942 0.000
97 ODDBALL RARE 0.000 -1.942
98 ODDBALL STANDARD -2.000 0.000
99 ODDBALL STANDARD 0.000
100 ODDBALL STANDARD 0.000
101 ODDBALL RARE 0.000
102 ODDBALL STANDARD 0.000
103 ODDBALL STANDARD 1.690 -1.792
104 ODDBALL RARE 0.000 -1.690
105 ODDBALL STANDARD 0.000
106 ODDBALL STANDARD 0.000
107 ODDBALL STANDARD 1.744 0.000
108 ODDBALL RARE 0.000 -1.744
109 ODDBALL STANDARD 0.000
110 ODDBALL STANDARD 0.000
111 ODDBALL STANDARD -1.728
112 ODDBALL STANDARD 0.000
113 ODDBALL STANDARD 1.980 -1.878
114 ODDBALL RARE 0.000 -1.980
115 ODDBALL STANDARD -1.960 0.000
116 ODDBALL STANDARD -1.532
117 ODDBALL STANDARD 0.000
118 ODDBALL STANDARD 0.000
119 ODDBALL STANDARD 0.000
120 ODDBALL RARE 0.000
121 ODDBALL STANDARD 0.000
122 ODDBALL STANDARD 0.000
123 ODDBALL RARE 0.000 1.590
124 ODDBALL STANDARD -1.590 0.000
125 ODDBALL STANDARD 0.000
126 ODDBALL STANDARD 0.000
127 ODDBALL STANDARD -1.618
128 ODDBALL STANDARD 0.000
129 ODDBALL RARE 0.000 1.764
130 ODDBALL STANDARD -1.764 0.000
131 ODDBALL STANDARD -1.986
132 ODDBALL STANDARD 0.000
133 ODDBALL STANDARD -1.740
134 ODDBALL STANDARD 0.000
135 ODDBALL RARE 0.000
136 ODDBALL STANDARD 0.000
137 ODDBALL STANDARD 0.000
138 ODDBALL STANDARD 0.000
139 ODDBALL STANDARD -1.942
140 ODDBALL RARE 0.000
141 ODDBALL STANDARD 0.000
142 ODDBALL STANDARD -1.662
143 ODDBALL RARE 0.000 1.674
144 ODDBALL STANDARD -1.674 0.000
145 ODDBALL STANDARD -1.770
146 ODDBALL RARE 0.000
147 ODDBALL STANDARD 0.000
148 ODDBALL STANDARD 0.000
149 ODDBALL STANDARD -1.912
150 ODDBALL STANDARD 0.000
151 ODDBALL STANDARD -1.730
152 ODDBALL RARE 0.000 1.688
153 ODDBALL STANDARD -1.688 0.000
154 ODDBALL STANDARD 0.000
155 ODDBALL STANDARD -1.964
156 ODDBALL RARE 0.000
157 ODDBALL STANDARD 0.000
158 ODDBALL STANDARD 0.000
159 ODDBALL STANDARD -1.584
160 ODDBALL STANDARD 1.818 -1.540
161 ODDBALL RARE 0.000 -1.818
162 ODDBALL STANDARD 0.000
163 ODDBALL STANDARD 0.000
164 ODDBALL RARE 0.000
165 ODDBALL STANDARD 0.000
166 ODDBALL STANDARD 0.000
167 ODDBALL STANDARD 0.000
168 ODDBALL STANDARD -1.546
169 ODDBALL RARE 0.000 1.628
170 ODDBALL STANDARD -1.628 0.000
171 ODDBALL STANDARD 0.000
172 ODDBALL RARE 0.000 1.624
173 ODDBALL STANDARD -1.624 0.000
174 ODDBALL STANDARD 0.000
175 ODDBALL STANDARD 0.000
176 ODDBALL STANDARD -1.874
177 ODDBALL STANDARD 1.598 0.000
178 ODDBALL RARE 0.000 -1.598
179 ODDBALL STANDARD 0.000
180 ODDBALL STANDARD -1.864
181 ODDBALL STANDARD -1.868
182 ODDBALL STANDARD 0.000
183 ODDBALL RARE 0.000
184 ODDBALL STANDARD 0.000
185 ODDBALL STANDARD -1.626
186 ODDBALL STANDARD -1.944
187 ODDBALL STANDARD 0.000
188 ODDBALL STANDARD 0.000
189 ODDBALL RARE 0.000 1.588
190 ODDBALL STANDARD -1.588 0.000
191 ODDBALL STANDARD 1.666 0.000
192 ODDBALL RARE 0.000 -1.666
193 ODDBALL STANDARD 0.000
194 ODDBALL STANDARD 0.000
195 ODDBALL STANDARD 0.000
196 ODDBALL STANDARD 0.000
197 ODDBALL STANDARD -1.552
198 ODDBALL RARE 0.000 1.768
199 ODDBALL STANDARD 0.502 -1.768 0.000

200 rows × 8 columns

ERP image (EEG)
No epochs exceeded the rejection thresholds. Nothing was dropped.
PSD
PSD calculated from 8 epochs (32.0 s).
Method picard
Fit parameters fastica_it=5
max_iter=500
Fit 156 iterations on epochs (400200 samples)
ICA components 63
Available PCA components 63
Channel types eeg
ICA components marked for exclusion ICA000
ICA002
ICA060
Original and cleaned signal
ICA component topographies
ICA component properties
ICA component 0.
ICA component properties
ICA component 2.
ICA component properties
ICA component 60.
General
Filename(s) sub-007_task-Oddball_run-01_proc-filt_raw.fif
MNE object type Raw
Measurement date Unknown
Participant sub-007
Experimenter Unknown
Acquisition
Duration 00:11:22 (HH:MM:SS)
Sampling frequency 500.00 Hz
Time points 340,994
Channels
EEG
EOG
Head & sensor digitization 66 points
Filters
Highpass 1.00 Hz
Lowpass 120.00 Hz
Time series
Segment 1 of 5
Time series
Segment 2 of 5
Time series
Segment 3 of 5
Time series
Segment 4 of 5
Time series
Segment 5 of 5
PSD
autoreject_local cleaning
Autoreject was run to produce cleaner epochs. 0 epochs were rejected because more than {'eeg': 16} channels were bad (cross-validated n_interpolate limit; excluding globally bad and non-data channels, shown in white).
General
Filename(s) sub-007_task-Oddball_proc-ica_epo.fif
MNE object type EpochsFIF
Measurement date Unknown
Participant sub-007
Experimenter Unknown
Acquisition
Total number of events 200
Events counts ODDBALL RARE: 44
ODDBALL STANDARD: 156
Time range -2.000 – 2.000 s
Baseline -0.200 – 0.000 s
Sampling frequency 500.00 Hz
Time points 2,001
Metadata 200 rows × 7 columns
Channels
EEG
EOG
Head & sensor digitization 66 points
Filters
Highpass 1.00 Hz
Lowpass 120.00 Hz
Projections Average EEG reference (on)
Epoch # event_name ODDBALL DONE ODDBALL RARE ODDBALL STANDARD ODDBALL START STATUS/S 50 STATUS/boundary
0 ODDBALL STANDARD 0.000 -0.986 None None
1 ODDBALL STANDARD -1.582 None None
2 ODDBALL STANDARD 0.000 None None
3 ODDBALL STANDARD 1.830 0.000 None None
4 ODDBALL RARE 0.000 -1.830 None None
5 ODDBALL STANDARD -1.564 0.000 None None
6 ODDBALL STANDARD -1.580 None None
7 ODDBALL STANDARD 0.000 None None
8 ODDBALL STANDARD -1.832 None None
9 ODDBALL STANDARD -1.988 None None
10 ODDBALL RARE 0.000 1.812 None None
11 ODDBALL STANDARD -1.812 0.000 None None
12 ODDBALL STANDARD 0.000 None None
13 ODDBALL STANDARD -1.564 None None
14 ODDBALL STANDARD -1.952 None None
15 ODDBALL STANDARD 1.956 0.000 None None
16 ODDBALL RARE 0.000 -1.956 None None
17 ODDBALL STANDARD 0.000 None None
18 ODDBALL STANDARD 0.000 None None
19 ODDBALL STANDARD 1.572 -1.628 None None
20 ODDBALL RARE 0.000 -1.572 None None
21 ODDBALL STANDARD -1.762 0.000 None None
22 ODDBALL STANDARD -1.786 None None
23 ODDBALL STANDARD -1.858 None None
24 ODDBALL STANDARD 0.000 None None
25 ODDBALL RARE 0.000 1.906 None None
26 ODDBALL STANDARD -1.906 0.000 None None
27 ODDBALL STANDARD 0.000 None None
28 ODDBALL STANDARD 0.000 None None
29 ODDBALL STANDARD 0.000 None None
30 ODDBALL STANDARD 1.628 0.000 None None
31 ODDBALL RARE 0.000 -1.628 None None
32 ODDBALL STANDARD 0.000 None None
33 ODDBALL STANDARD 0.000 None None
34 ODDBALL STANDARD 0.000 None None
35 ODDBALL STANDARD 1.996 0.000 None None
36 ODDBALL RARE 0.000 -1.996 None None
37 ODDBALL STANDARD -1.932 0.000 None None
38 ODDBALL STANDARD -1.960 None None
39 ODDBALL RARE 0.000 1.702 None None
40 ODDBALL STANDARD -1.702 0.000 None None
41 ODDBALL STANDARD 0.000 None None
42 ODDBALL STANDARD 0.000 None None
43 ODDBALL RARE 0.000 None None
44 ODDBALL STANDARD 0.000 None None
45 ODDBALL STANDARD -1.846 None None
46 ODDBALL STANDARD -1.532 None None
47 ODDBALL RARE 0.000 None None
48 ODDBALL STANDARD 0.000 None None
49 ODDBALL STANDARD 0.000 None None
50 ODDBALL STANDARD 0.000 None None
51 ODDBALL STANDARD 0.000 None None
52 ODDBALL STANDARD -1.934 None None
53 ODDBALL RARE 0.000 1.846 None None
54 ODDBALL STANDARD -1.846 0.000 None None
55 ODDBALL STANDARD -1.690 None None
56 ODDBALL RARE 0.000 None None
57 ODDBALL STANDARD 0.000 None None
58 ODDBALL STANDARD 0.000 None None
59 ODDBALL RARE 0.000 1.848 None None
60 ODDBALL STANDARD -1.848 0.000 None None
61 ODDBALL STANDARD 0.000 None None
62 ODDBALL STANDARD -1.978 None None
63 ODDBALL STANDARD -1.926 None None
64 ODDBALL STANDARD -1.782 None None
65 ODDBALL RARE 0.000 1.776 None None
66 ODDBALL STANDARD -1.776 0.000 None None
67 ODDBALL STANDARD 0.000 None None
68 ODDBALL RARE 0.000 None None
69 ODDBALL STANDARD 0.000 None None
70 ODDBALL STANDARD 1.858 0.000 None None
71 ODDBALL RARE 0.000 -1.858 None None
72 ODDBALL STANDARD -1.946 0.000 None None
73 ODDBALL STANDARD -1.806 None None
74 ODDBALL RARE 0.000 None None
75 ODDBALL STANDARD 0.000 None None
76 ODDBALL STANDARD -1.584 None None
77 ODDBALL STANDARD -1.656 None None
78 ODDBALL STANDARD 0.000 None None
79 ODDBALL STANDARD 0.000 None None
80 ODDBALL RARE 0.000 None None
81 ODDBALL STANDARD 0.000 None None
82 ODDBALL STANDARD -1.726 None None
83 ODDBALL STANDARD 0.000 None None
84 ODDBALL STANDARD 0.000 None None
85 ODDBALL STANDARD 1.710 0.000 None None
86 ODDBALL RARE 0.000 -1.710 None None
87 ODDBALL STANDARD 0.000 None None
88 ODDBALL STANDARD -1.702 None None
89 ODDBALL RARE 0.000 None None
90 ODDBALL STANDARD 0.000 None None
91 ODDBALL STANDARD -1.516 None None
92 ODDBALL STANDARD 0.000 None None
93 ODDBALL STANDARD -1.616 None None
94 ODDBALL RARE 0.000 None None
95 ODDBALL STANDARD 0.000 None None
96 ODDBALL STANDARD 1.942 0.000 None None
97 ODDBALL RARE 0.000 -1.942 None None
98 ODDBALL STANDARD -2.000 0.000 None None
99 ODDBALL STANDARD 0.000 None None
100 ODDBALL STANDARD 0.000 None None
101 ODDBALL RARE 0.000 None None
102 ODDBALL STANDARD 0.000 None None
103 ODDBALL STANDARD 1.690 -1.792 None None
104 ODDBALL RARE 0.000 -1.690 None None
105 ODDBALL STANDARD 0.000 None None
106 ODDBALL STANDARD 0.000 None None
107 ODDBALL STANDARD 1.744 0.000 None None
108 ODDBALL RARE 0.000 -1.744 None None
109 ODDBALL STANDARD 0.000 None None
110 ODDBALL STANDARD 0.000 None None
111 ODDBALL STANDARD -1.728 None None
112 ODDBALL STANDARD 0.000 None None
113 ODDBALL STANDARD 1.980 -1.878 None None
114 ODDBALL RARE 0.000 -1.980 None None
115 ODDBALL STANDARD -1.960 0.000 None None
116 ODDBALL STANDARD -1.532 None None
117 ODDBALL STANDARD 0.000 None None
118 ODDBALL STANDARD 0.000 None None
119 ODDBALL STANDARD 0.000 None None
120 ODDBALL RARE 0.000 None None
121 ODDBALL STANDARD 0.000 None None
122 ODDBALL STANDARD 0.000 None None
123 ODDBALL RARE 0.000 1.590 None None
124 ODDBALL STANDARD -1.590 0.000 None None
125 ODDBALL STANDARD 0.000 None None
126 ODDBALL STANDARD 0.000 None None
127 ODDBALL STANDARD -1.618 None None
128 ODDBALL STANDARD 0.000 None None
129 ODDBALL RARE 0.000 1.764 None None
130 ODDBALL STANDARD -1.764 0.000 None None
131 ODDBALL STANDARD -1.986 None None
132 ODDBALL STANDARD 0.000 None None
133 ODDBALL STANDARD -1.740 None None
134 ODDBALL STANDARD 0.000 None None
135 ODDBALL RARE 0.000 None None
136 ODDBALL STANDARD 0.000 None None
137 ODDBALL STANDARD 0.000 None None
138 ODDBALL STANDARD 0.000 None None
139 ODDBALL STANDARD -1.942 None None
140 ODDBALL RARE 0.000 None None
141 ODDBALL STANDARD 0.000 None None
142 ODDBALL STANDARD -1.662 None None
143 ODDBALL RARE 0.000 1.674 None None
144 ODDBALL STANDARD -1.674 0.000 None None
145 ODDBALL STANDARD -1.770 None None
146 ODDBALL RARE 0.000 None None
147 ODDBALL STANDARD 0.000 None None
148 ODDBALL STANDARD 0.000 None None
149 ODDBALL STANDARD -1.912 None None
150 ODDBALL STANDARD 0.000 None None
151 ODDBALL STANDARD -1.730 None None
152 ODDBALL RARE 0.000 1.688 None None
153 ODDBALL STANDARD -1.688 0.000 None None
154 ODDBALL STANDARD 0.000 None None
155 ODDBALL STANDARD -1.964 None None
156 ODDBALL RARE 0.000 None None
157 ODDBALL STANDARD 0.000 None None
158 ODDBALL STANDARD 0.000 None None
159 ODDBALL STANDARD -1.584 None None
160 ODDBALL STANDARD 1.818 -1.540 None None
161 ODDBALL RARE 0.000 -1.818 None None
162 ODDBALL STANDARD 0.000 None None
163 ODDBALL STANDARD 0.000 None None
164 ODDBALL RARE 0.000 None None
165 ODDBALL STANDARD 0.000 None None
166 ODDBALL STANDARD 0.000 None None
167 ODDBALL STANDARD 0.000 None None
168 ODDBALL STANDARD -1.546 None None
169 ODDBALL RARE 0.000 1.628 None None
170 ODDBALL STANDARD -1.628 0.000 None None
171 ODDBALL STANDARD 0.000 None None
172 ODDBALL RARE 0.000 1.624 None None
173 ODDBALL STANDARD -1.624 0.000 None None
174 ODDBALL STANDARD 0.000 None None
175 ODDBALL STANDARD 0.000 None None
176 ODDBALL STANDARD -1.874 None None
177 ODDBALL STANDARD 1.598 0.000 None None
178 ODDBALL RARE 0.000 -1.598 None None
179 ODDBALL STANDARD 0.000 None None
180 ODDBALL STANDARD -1.864 None None
181 ODDBALL STANDARD -1.868 None None
182 ODDBALL STANDARD 0.000 None None
183 ODDBALL RARE 0.000 None None
184 ODDBALL STANDARD 0.000 None None
185 ODDBALL STANDARD -1.626 None None
186 ODDBALL STANDARD -1.944 None None
187 ODDBALL STANDARD 0.000 None None
188 ODDBALL STANDARD 0.000 None None
189 ODDBALL RARE 0.000 1.588 None None
190 ODDBALL STANDARD -1.588 0.000 None None
191 ODDBALL STANDARD 1.666 0.000 None None
192 ODDBALL RARE 0.000 -1.666 None None
193 ODDBALL STANDARD 0.000 None None
194 ODDBALL STANDARD 0.000 None None
195 ODDBALL STANDARD 0.000 None None
196 ODDBALL STANDARD 0.000 None None
197 ODDBALL STANDARD -1.552 None None
198 ODDBALL RARE 0.000 1.768 None None
199 ODDBALL STANDARD 0.502 -1.768 0.000 None None

200 rows × 8 columns

ERP image (EEG)
No epochs exceeded the rejection thresholds. Nothing was dropped.
PSD
PSD calculated from 8 epochs (32.0 s).
General
MNE object type EvokedArray
Measurement date Unknown
Participant sub-007
Experimenter Unknown
Acquisition
Aggregation average of 156 epochs
Condition ODDBALL STANDARD
Time range -2.000 – 2.000 s
Baseline -0.200 – 0.000 s
Sampling frequency 500.00 Hz
Time points 2,001
Channels
EEG
Head & sensor digitization 66 points
Filters
Highpass 1.00 Hz
Lowpass 120.00 Hz
Projections Average EEG reference (on)
Time course (EEG)
Topographies
Time point: -2.000 s
Topographies
Time point: -1.800 s
Topographies
Time point: -1.600 s
Topographies
Time point: -1.400 s
Topographies
Time point: -1.200 s
Topographies
Time point: -1.000 s
Topographies
Time point: -0.800 s
Topographies
Time point: -0.600 s
Topographies
Time point: -0.400 s
Topographies
Time point: -0.200 s
Topographies
Time point: 0.000 s
Topographies
Time point: 0.200 s
Topographies
Time point: 0.400 s
Topographies
Time point: 0.600 s
Topographies
Time point: 0.800 s
Topographies
Time point: 1.000 s
Topographies
Time point: 1.200 s
Topographies
Time point: 1.400 s
Topographies
Time point: 1.600 s
Topographies
Time point: 1.800 s
Topographies
Time point: 2.000 s
Global field power
General
MNE object type EvokedArray
Measurement date Unknown
Participant sub-007
Experimenter Unknown
Acquisition
Aggregation average of 44 epochs
Condition ODDBALL RARE
Time range -2.000 – 2.000 s
Baseline -0.200 – 0.000 s
Sampling frequency 500.00 Hz
Time points 2,001
Channels
EEG
Head & sensor digitization 66 points
Filters
Highpass 1.00 Hz
Lowpass 120.00 Hz
Projections Average EEG reference (on)
Time course (EEG)
Topographies
Time point: -2.000 s
Topographies
Time point: -1.800 s
Topographies
Time point: -1.600 s
Topographies
Time point: -1.400 s
Topographies
Time point: -1.200 s
Topographies
Time point: -1.000 s
Topographies
Time point: -0.800 s
Topographies
Time point: -0.600 s
Topographies
Time point: -0.400 s
Topographies
Time point: -0.200 s
Topographies
Time point: 0.000 s
Topographies
Time point: 0.200 s
Topographies
Time point: 0.400 s
Topographies
Time point: 0.600 s
Topographies
Time point: 0.800 s
Topographies
Time point: 1.000 s
Topographies
Time point: 1.200 s
Topographies
Time point: 1.400 s
Topographies
Time point: 1.600 s
Topographies
Time point: 1.800 s
Topographies
Time point: 2.000 s
Global field power
TFR Power: ODDBALL STANDARD
TFR Power: ODDBALL STANDARD
TFR ITC: ODDBALL STANDARD
TFR Inter-Trial Coherence: ODDBALL STANDARD
TFR Power: ODDBALL RARE
TFR Power: ODDBALL RARE
TFR ITC: ODDBALL RARE
TFR Inter-Trial Coherence: ODDBALL RARE
Covariance matrix
Singular values
Whitening: ODDBALL STANDARD
Whitening: ODDBALL RARE 
  # Default settings for data processing and analysis.

from collections.abc import Callable, Sequence
import sys
from typing import Annotated, Any, Literal

from annotated_types import Ge, Interval, Len, MinLen
from mne import Covariance
from mne_bids import BIDSPath

from mne_bids_pipeline.typing import (
     ArbitraryContrast,
     DigMontageType,
     FloatArrayLike,
     PathLike,
 )

import argparse

import numpy as np

bids_root = "./data_split/"

interactive = False


args = [arg for arg in sys.argv if arg.startswith("--task") or not arg.startswith("-")]
parser = argparse.ArgumentParser()
parser.add_argument("ignored", nargs="*")
parser.add_argument(
    "--task", choices=("Gambling","Oddball","Axon"), required=True
)
task = parser.parse_args(args).task 
sessions = "all"

runs = "all" # Always 01 anyway
#crop_runs: tuple[float, float] | None = None
subjects = "all"

ch_types = ["eeg"] # not considering eog channels 
data_type = "eeg" # redundant


eog_channels = None # has to be none, because we have actual EOG channels

eeg_reference = "average" # default setting

#TODO check if this actually applies montage
eeg_template_montage = None # custom montage

#drop_channels: Sequence[str] = []

# Read full_config.py for more context
# Might make sense to restrict this?
analyze_channels = "ch_types"


read_raw_bids_verbose = 'error' # Don't log everyting, since files are not perfectly BIDS compliant

#FFT Power spectrum
plot_psd_for_runs = "all" # Default value



######################### Preprocessing #########################


# Read full_config.py for more context
# Paper doesn't mention breaks, but could have still happened since gameplay was quite long
find_breaks: bool = True # Default is false

min_break_duration: float = 15.0 # Default value

# Makes sense, also considering our epoching
t_break_annot_start_after_previous_event: float = 5.0 # Default value
t_break_annot_stop_before_next_event: float = 5.0 # Default value




# ## Bad channel detection
#
# Read full_config.py for context of the used algorithm

# Original paper simply removed most ventral electrodes (leaving 60).
# Is there something like this for eeg channels?
#find_flat_channels_meg: bool = True # Default is False
#find_noisy_channels_meg: bool = True # Default is False


# %%
# ## Maxwell filter

# Read full_config.py for context
# Might make sense to enable? There are many parameters than can be set
# Chose to keep disabled since it doesn't seem to be common? (esp. for EEG data)
# According to the samples: https://mne.tools/mne-bids-pipeline/stable/examples/examples.html
# use_maxwell_filter: bool = False
# mf_st_duration: float | None = None


# ## Filtering & resampling

# ### Filtering
#
# Read full_config.py for context (!!!)
# mne-bids-pipeline does not allow ICA if l_freq is below 1 Hz!! See ica_l_freq in full_config.py
l_freq: float | None = 1 # Paper uses 0.1 Hz, full_config.py recommends 1 Hz
h_freq: float | None = 120 # Paper uses 20 Hz, full_config.py recommends 40 or 120 depending on type of analysis

#TODO Why does this default to None? See if powerline noise is filtered elsewhere
notch_freq: float | Sequence[float] | None = 60 # Default is None
# notch_trans_bandwidth: float = 1.0



# ### Resampling
#
# Not necessary since already 500Hz
# raw_resample_sfreq: float | None = None


# ## Epoching

# Could be useful if event names are not as desired
# rename_events: dict = dict()
# on_rename_missing_events: Literal["ignore", "warn", "raise"] = "raise"

# TODO TODO TODO TODO

#1) missile launch button press (SHOOT_BUTTON)
#2) collect star (COLLECT_STAR)
#3) collect ammo box (COLLECT_AMMO)
#4) crash into wall (PLAYER_CRASH_WALL)
#5) crash into enemy (PLAYER_CRASH_ENEMY)
#6) missile hit enemy (MISSILE_HIT_ENEMY)

"""
The paper describes issues with the "PLAYER_CRASH_WALL" and "COLLECT_STAR" events often occuring in rapid succession, where only the first one is kept.
The filtering has already been done in step 01, and the offending events are now marked as "IGNORE PLAYER_CRASH_WALL" and "IGNORE COLLECT_STAR"
"""

conditions = []

if(task == "Gambling"): #"Wins and losses" Exemplar events
    conditions = ["GAMBLING LOSS", "GAMBLING WIN"]
elif(task == "Oddball"): #"Target detection" Exemplar events
    conditions = ["ODDBALL STANDARD", "ODDBALL RARE"]
elif(task == "Axon"):
    #There are also "GAME OVER" and "GAME START", but they occur only once (?)
    conditions = ["SHOOT_BUTTON", "MISSILE_HIT_ENEMY", "COLLECT_STAR", "COLLECT_AMMO", "PLAYER_CRASH_ENEMY", "PLAYER_CRASH_WALL"]

#TODO Check whether these epoch timings from the paper make sense. They seem unusually long?
epochs_tmin: float = -2
epochs_tmax: float = 2

#Also from the paper
baseline: tuple[float | None, float | None] | None = (-0.2, 0)


# ## Artifact removal

# ### SSP, ICA, and artifact regression

#TODO check if this performs the intended behavior (removing eye artifacts from eeg by using the eog channels)
# For some reason, this throws an error :(
#regress_artifact = {
#    "picks": "eeg", 
#    "picks_artifact": ["HEOG", "VEOG"]
#}

#TODO maybe SSP could make sense too?
# For SSP there are some more variables aswell
spatial_filter: Literal["ssp", "ica"] | None = "ica"
# """
# !!! warning "ICA requires manual intervention!"
#     After the automatic ICA component detection step, review each subject's
#     `*_report.html` report file check if the set of ICA components to be removed
#     is correct. Adjustments should be made to the `*_proc-ica_components.tsv`
#     file, which will then be used in the step that is applied during ICA.

#     ICA component order can be considered arbitrary, so any time the ICA is
#     re-fit – i.e., if you change any parameters that affect steps prior to
#     ICA fitting – this file will need to be updated!
# """

#TODO check percentage of rejected epochs. Paper states 3.27%
ica_reject: dict[str, float] | Literal["autoreject_local"] | None = "autoreject_local"


# Can go as high as 3000 for convergence
# ica_max_iterations: int = 500

# Read full_config.py for context
# None == 0.9999 might be optimal if only artifact removal is of interest
# ica_n_components: float | int | None = None


#TODO Browse raw data to find actual eog and ecg thresholds
#Read full_config.py for tips on how to do this
# ica_ecg_threshold: float = 0.1
# """
# The cross-trial phase statistics (CTPS) threshold parameter used for detecting
# ECG-related ICs.
# """

# ica_eog_threshold: float = 3.0
# """
# The threshold to use during automated EOG classification. Lower values mean
# that more ICs will be identified as EOG-related. If too low, the
# false-alarm rate increases dramatically.
# """

#For rejection after ICA
#Probably makes the most sense for data with moderate amounts of artifacts
reject: dict[str, float] | Literal["autoreject_global", "autoreject_local"] | None = "autoreject_local"#(
#     None
# )


# In the paper a median of 2 electrodes (range 1 to 3) was interpolated, so add these values
autoreject_n_interpolate: FloatArrayLike = [1,2,3, 4, 8, 16] # Default [4, 8, 16]
# """
# The maximum number of bad channels in an epoch that `autoreject` local will try to
# interpolate. The optimal number among this list will be estimated using a
# cross-validation procedure; this means that the more elements are provided here, the
# longer the `autoreject` run will take. If the number of bad channels in an epoch
# exceeds this value, the channels won't be interpolated and the epoch will be dropped.

# Read full_config.py for more context
# Has many more parameters
decode = False # Default is True

# ## Time-frequency analysis

# Just put in all events for now (?)
time_frequency_conditions: Sequence[str] = conditions

#TODO look at the data to find optimal values
# time_frequency_freq_min: float | None = 8
# time_frequency_freq_max: float | None = 40

time_frequency_freq_min = 1  # minimum frequency in Hz
time_frequency_freq_max = 50  # maximum frequency in Hz
#1 to 50 Hz in 49 logarithmically spaced steps
frequencies = np.logspace(np.log10(time_frequency_freq_min), np.log10(time_frequency_freq_max), 49)

# sigma
time_frequency_cycles = 4 / (2 * np.pi * frequencies)

# time_frequency_subtract_evoked: bool = False

time_frequency_baseline: tuple[float, float] | None = (-0.3, -0.2)
time_frequency_baseline_mode: str = "logratio" # Default is "mean"
time_frequency_crop: dict | None = dict(tmin=-0.5, tmax=1, fmin=1, fmax=50) # Default in None



n_jobs: int = 12
# """
# Specifies how many subjects you want to process in parallel. If `1`, disables
# parallel processing.
# """


  Platform             Linux-6.5.0-44-generic-x86_64-with-glibc2.38
Python               3.11.6 (main, Apr 10 2024, 17:26:07) [GCC 13.2.0]
Executable           /home/okk/.local/bin/python3.11
CPU                  x86_64 (12 cores)
Memory               62.7 GB

Core
├☑ mne               1.8.0 (latest release)
├☑ numpy             1.26.4 (OpenBLAS 0.3.23.dev with 1 thread)
├☑ scipy             1.12.0
└☑ matplotlib        3.8.2 (backend=agg)

Numerical (optional)
├☑ sklearn           1.3.2
├☑ numba             0.58.1
├☑ nibabel           5.3.2
├☑ pandas            1.5.3
├☑ h5io              0.2.4
├☑ h5py              3.10.0
└☐ unavailable       nilearn, dipy, openmeeg, cupy

Visualization (optional)
├☑ pyvista           0.44.2 (OpenGL 4.5.0 NVIDIA 535.171.04 via NVIDIA GeForce GTX 1060 6GB/PCIe/SSE2)
├☑ pyvistaqt         0.11.1
├☑ vtk               9.3.1
├☑ qtpy              2.4.2 (PyQt5=5.15.14)
├☑ pyqtgraph         0.13.7
└☐ unavailable       ipympl, mne-qt-browser, ipywidgets, trame_client, trame_server, trame_vtk, trame_vuetify

Ecosystem (optional)
├☑ mne-bids          0.16.0
├☑ mne-bids-pipeline 1.9.0
├☑ eeglabio          0.0.3
├☑ edfio             0.4.5
├☑ pybv              0.7.6
└☐ unavailable       mne-nirs, mne-features, mne-connectivity, mne-icalabel, neo, mffpy